workflow_generator

Generates bash script templates for common deepTools workflows.

Skills
Scientific
4

What it does and how to use it

A skill that teaches Claude Code to do scientific tasks well. It is packaged knowledge the model uses whenever it is relevant.

Install the skill (command above).
In Claude Code, describe what you need - the skill turns on by itself when the context fits.
No commands to memorize: you talk in plain language and the skill does the rest.

Install (Claude Code)

mkdir -p .claude/skills/workflow-generator && curl -fsSL https://doutorai.pt/data/lib/skills__workflow-generator.md -o .claude/skills/workflow-generator/SKILL.md

Paste this command into the terminal, in your project folder, and the component installs automatically.

Content

#!/usr/bin/env python3
"""
deepTools Workflow Generator

Generates bash script templates for common deepTools workflows.
"""

import argparse
import sys


WORKFLOWS = {
    'chipseq_qc': {
        'name': 'ChIP-seq Quality Control',
        'description': 'Complete QC workflow for ChIP-seq experiments',
    },
    'chipseq_analysis': {
        'name': 'ChIP-seq Complete Analysis',
        'description': 'Full ChIP-seq analysis from BAM to heatmaps',
    },
    'rnaseq_coverage': {
        'name': 'RNA-seq Coverage Tracks',
        'description': 'Generate strand-specific RNA-seq coverage',
   

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