tissue_masks

Tissue masks are binary representations that identify tissue regions within whole slide images. They are essential for filtering out background, artifacts, and non-tissue areas during tile extraction. Histolab provides several mask classes…

Skills
Scientific
0

What it does and how to use it

A skill that teaches Claude Code to do scientific tasks well. It is packaged knowledge the model uses whenever it is relevant.

Install the skill (command above).
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Install (Claude Code)

mkdir -p .claude/skills/tissue-masks && curl -fsSL https://doutorai.pt/data/lib/skills__tissue-masks.md -o .claude/skills/tissue-masks/SKILL.md

Paste this command into the terminal, in your project folder, and the component installs automatically.

Content

# Tissue Masks

## Overview

Tissue masks are binary representations that identify tissue regions within whole slide images. They are essential for filtering out background, artifacts, and non-tissue areas during tile extraction. Histolab provides several mask classes to accommodate different tissue segmentation needs.

## Mask Classes

### BinaryMask

**Purpose:** Generic base class for creating custom binary masks.

```python
from histolab.masks import BinaryMask

class CustomMask(BinaryMask):
    def _mask(self, obj):
        # Implement custom masking logic
        # Return binary numpy ar

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