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rois

This reference covers creating, retrieving, and analyzing ROIs in OMERO.

  • Skills
  • Scientific
  • 0

What it does and how to use it

A skill that teaches Claude Code to do scientific tasks well. It is packaged knowledge the model uses whenever it is relevant.

  1. Install the skill (command above).
  2. In Claude Code, describe what you need - the skill turns on by itself when the context fits.
  3. No commands to memorize: you talk in plain language and the skill does the rest.

Install (Claude Code)

mkdir -p .claude/skills/rois && curl -fsSL https://doutorai.pt/data/lib/skills__rois.md -o .claude/skills/rois/SKILL.md

Paste this command into the terminal, in your project folder, and the component installs automatically.

Content

# Regions of Interest (ROIs)

This reference covers creating, retrieving, and analyzing ROIs in OMERO.

## ROI Overview

ROIs (Regions of Interest) in OMERO are containers for geometric shapes that mark specific regions on images. Each ROI can contain multiple shapes, and shapes can be specific to Z-sections and timepoints.

### Supported Shape Types

- **Rectangle**: Rectangular regions
- **Ellipse**: Circular and elliptical regions
- **Line**: Line segments
- **Point**: Single points
- **Polygon**: Multi-point polygons
- **Mask**: Pixel-based masks
- **Polyline**: Multi-segment lines

## Cre

- 🔒 Full content on the Pro plan (€7.99/month) -

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