refget

The refget module handles reference sequence retrieval and digest computation, following the refget protocol for sequence identification.

Skills
Scientific
0

What it does and how to use it

A skill that teaches Claude Code to do scientific tasks well. It is packaged knowledge the model uses whenever it is relevant.

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Install (Claude Code)

mkdir -p .claude/skills/refget && curl -fsSL https://doutorai.pt/data/lib/skills__refget.md -o .claude/skills/refget/SKILL.md

Paste this command into the terminal, in your project folder, and the component installs automatically.

Content

# Reference Sequence Management

The refget module handles reference sequence retrieval and digest computation, following the refget protocol for sequence identification.

## RefgetStore

RefgetStore manages reference sequences and their digests:

```python
import gtars

# Create RefgetStore
store = gtars.RefgetStore()

# Add sequence
store.add_sequence("chr1", sequence_data)

# Retrieve sequence
seq = store.get_sequence("chr1")

# Get sequence digest
digest = store.get_digest("chr1")
```

## Sequence Digests

Compute and verify sequence digests:

```python
# Compute digest for sequence
from g

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