reactome_query

This script provides convenient command-line access to common Reactome operations.

Skills
Scientific
0

What it does and how to use it

A skill that teaches Claude Code to do scientific tasks well. It is packaged knowledge the model uses whenever it is relevant.

Install the skill (command above).
In Claude Code, describe what you need - the skill turns on by itself when the context fits.
No commands to memorize: you talk in plain language and the skill does the rest.

Install (Claude Code)

mkdir -p .claude/skills/reactome-query && curl -fsSL https://doutorai.pt/data/lib/skills__reactome-query.md -o .claude/skills/reactome-query/SKILL.md

Paste this command into the terminal, in your project folder, and the component installs automatically.

Content

#!/usr/bin/env python3
"""
Reactome Database Query Helper Script

This script provides convenient command-line access to common Reactome operations.

Usage:
    python reactome_query.py version
    python reactome_query.py query <pathway_id>
    python reactome_query.py analyze <gene_list_file>
    python reactome_query.py search <term>
    python reactome_query.py entities <pathway_id>

Examples:
    python reactome_query.py version
    python reactome_query.py query R-HSA-69278
    python reactome_query.py analyze genes.txt
    python reactome_query.py search "cell cycle"
    python reactome

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