python-sdk

The dxpy library provides Python bindings to interact with the DNAnexus Platform. It's available both within the DNAnexus Execution Environment (for apps running on the platform) and for external scripts accessing the API.

Skills
Scientific
2

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Install (Claude Code)

mkdir -p .claude/skills/python-sdk && curl -fsSL https://doutorai.pt/data/lib/skills__python-sdk.md -o .claude/skills/python-sdk/SKILL.md

Paste this command into the terminal, in your project folder, and the component installs automatically.

Content

# DNAnexus Python SDK (dxpy)

## Overview

The dxpy library provides Python bindings to interact with the DNAnexus Platform. It's available both within the DNAnexus Execution Environment (for apps running on the platform) and for external scripts accessing the API.

## Installation

```bash
# Install dxpy
pip install dxpy

# Or using conda
conda install -c bioconda dxpy
```

**Requirements**: Python 3.8 or higher

## Authentication

### Login

```bash
# Login via command line
dx login
```

### API Token

```python
import dxpy

# Set authentication token
dxpy.set_security_context({
    "auth_to

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