proteomics_metabolomics_formats

This reference covers file formats specific to proteomics, metabolomics, lipidomics, and related omics workflows.

Skills
Scientific
5

What it does and how to use it

A skill that teaches Claude Code to do scientific tasks well. It is packaged knowledge the model uses whenever it is relevant.

Install the skill (command above).
In Claude Code, describe what you need - the skill turns on by itself when the context fits.
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Install (Claude Code)

mkdir -p .claude/skills/proteomics-metabolomics-formats && curl -fsSL https://doutorai.pt/data/lib/skills__proteomics-metabolomics-formats.md -o .claude/skills/proteomics-metabolomics-formats/SKILL.md

Paste this command into the terminal, in your project folder, and the component installs automatically.

Content

# Proteomics and Metabolomics File Formats Reference

This reference covers file formats specific to proteomics, metabolomics, lipidomics, and related omics workflows.

## Mass Spectrometry-Based Proteomics

### .mzML - Mass Spectrometry Markup Language
**Description:** Standard XML format for MS data
**Typical Data:** MS1 and MS2 spectra, retention times, intensities
**Use Cases:** Proteomics, metabolomics pipelines
**Python Libraries:**
- `pymzml`: `pymzml.run.Reader('file.mzML')`
- `pyteomics.mzml`: `pyteomics.mzml.read('file.mzML')`
- `pyopenms`: OpenMS Python bindings
**EDA Approach:**
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