protein_modeling
TorchDrug provides extensive support for protein-related tasks including sequence analysis, structure prediction, property prediction, and protein-protein interactions. Proteins are represented as graphs where nodes are amino acid residues…
- Skills
- Scientific
- 4
What it does and how to use it
A skill that teaches Claude Code to do scientific tasks well. It is packaged knowledge the model uses whenever it is relevant.
- Install the skill (command above).
- In Claude Code, describe what you need - the skill turns on by itself when the context fits.
- No commands to memorize: you talk in plain language and the skill does the rest.
Install (Claude Code)
mkdir -p .claude/skills/protein-modeling && curl -fsSL https://doutorai.pt/data/lib/skills__protein-modeling.md -o .claude/skills/protein-modeling/SKILL.mdPaste this command into the terminal, in your project folder, and the component installs automatically.
Content
# Protein Modeling
## Overview
TorchDrug provides extensive support for protein-related tasks including sequence analysis, structure prediction, property prediction, and protein-protein interactions. Proteins are represented as graphs where nodes are amino acid residues and edges represent spatial or sequential relationships.
## Available Datasets
### Protein Function Prediction
**Enzyme Function:**
- **EnzymeCommission** (17,562 proteins): EC number classification (7 levels)
- **BetaLactamase** (5,864 sequences): Enzyme activity prediction
**Protein Characteristics:**
- **Fluorescence**
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