protein_analysis_workflow

This script performs a comprehensive protein analysis pipeline: 1. UniProt search and identifier retrieval 2. FASTA sequence retrieval 3. BLAST similarity search 4. KEGG pathway discovery 5. PSICQUIC interaction mapping 6. GO annotation…

Skills
Scientific
3

What it does and how to use it

A skill that teaches Claude Code to do scientific tasks well. It is packaged knowledge the model uses whenever it is relevant.

Install the skill (command above).
In Claude Code, describe what you need - the skill turns on by itself when the context fits.
No commands to memorize: you talk in plain language and the skill does the rest.

Install (Claude Code)

mkdir -p .claude/skills/protein-analysis-workflow && curl -fsSL https://doutorai.pt/data/lib/skills__protein-analysis-workflow.md -o .claude/skills/protein-analysis-workflow/SKILL.md

Paste this command into the terminal, in your project folder, and the component installs automatically.

Content

#!/usr/bin/env python3
"""
Complete Protein Analysis Workflow

This script performs a comprehensive protein analysis pipeline:
1. UniProt search and identifier retrieval
2. FASTA sequence retrieval
3. BLAST similarity search
4. KEGG pathway discovery
5. PSICQUIC interaction mapping
6. GO annotation retrieval

Usage:
    python protein_analysis_workflow.py PROTEIN_NAME EMAIL [--skip-blast]

Examples:
    python protein_analysis_workflow.py ZAP70_HUMAN user@example.com
    python protein_analysis_workflow.py P43403 user@example.com --skip-blast

Note: BLAST searches can take several minutes. Use

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