parameters_reference

This document provides comprehensive details on all DiffDock configuration parameters and command-line options.

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Content

# DiffDock Configuration Parameters Reference

This document provides comprehensive details on all DiffDock configuration parameters and command-line options.

## Model & Checkpoint Settings

### Model Paths
- **`--model_dir`**: Directory containing the score model checkpoint
  - Default: `./workdir/v1.1/score_model`
  - DiffDock-L model (current default)

- **`--confidence_model_dir`**: Directory containing the confidence model checkpoint
  - Default: `./workdir/v1.1/confidence_model`

- **`--ckpt`**: Name of the score model checkpoint file
  - Default: `best_ema_inference_epoch_model.pt`

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