overlap

The overlaprs module provides efficient overlap detection between genomic intervals using the Integrated Genome Database (IGD) data structure.

Skills
Scientific
0

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Install (Claude Code)

mkdir -p .claude/skills/overlap && curl -fsSL https://doutorai.pt/data/lib/skills__overlap.md -o .claude/skills/overlap/SKILL.md

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Content

# Overlap Detection and IGD

The overlaprs module provides efficient overlap detection between genomic intervals using the Integrated Genome Database (IGD) data structure.

## IGD Index

IGD (Integrated Genome Database) is a specialized data structure for fast genomic interval queries and overlap detection.

### Building an IGD Index

Create indexes from genomic region files:

```python
import gtars

# Build IGD index from BED file
igd = gtars.igd.build_index("regions.bed")

# Save index for reuse
igd.save("regions.igd")

# Load existing index
igd = gtars.igd.load_index("regions.igd")
```

###

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