module_reference

Comprehensive parameter reference for all gget modules.

Skills
Scientific
1

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Content

# gget Module Reference

Comprehensive parameter reference for all gget modules.

## Reference & Gene Information Modules

### gget ref
Retrieve Ensembl reference genome FTPs and metadata.

**Parameters:**
| Parameter | Type | Description | Default |
|-----------|------|-------------|---------|
| `species` | str | Species in Genus_species format or shortcuts ('human', 'mouse') | Required |
| `-w/--which` | str | File types to return: gtf, cdna, dna, cds, cdrna, pep | All |
| `-r/--release` | int | Ensembl release number | Latest |
| `-od/--out_dir` | str | Output directory path | None |
| `-o/

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