models-specialized

This document covers models for specialized single-cell data modalities in scvi-tools.

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Content

# Specialized Modality Models

This document covers models for specialized single-cell data modalities in scvi-tools.

## MethylVI / MethylANVI (Methylation Analysis)

**Purpose**: Analysis of single-cell bisulfite sequencing (scBS-seq) data for DNA methylation.

**Key Features**:
- Models methylation patterns at single-cell resolution
- Handles sparsity in methylation data
- Batch correction for methylation experiments
- Label transfer (MethylANVI) for cell type annotation

**When to Use**:
- Analyzing scBS-seq or similar methylation data
- Studying DNA methylation patterns across cell types


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