models-atac-seq

This document covers models for analyzing single-cell ATAC-seq and chromatin accessibility data in scvi-tools.

Skills
Scientific
0

What it does and how to use it

A skill that teaches Claude Code to do scientific tasks well. It is packaged knowledge the model uses whenever it is relevant.

Install the skill (command above).
In Claude Code, describe what you need - the skill turns on by itself when the context fits.
No commands to memorize: you talk in plain language and the skill does the rest.

Install (Claude Code)

mkdir -p .claude/skills/models-atac-seq && curl -fsSL https://doutorai.pt/data/lib/skills__models-atac-seq.md -o .claude/skills/models-atac-seq/SKILL.md

Paste this command into the terminal, in your project folder, and the component installs automatically.

Content

# ATAC-seq and Chromatin Accessibility Models

This document covers models for analyzing single-cell ATAC-seq and chromatin accessibility data in scvi-tools.

## PeakVI

**Purpose**: Analysis and integration of single-cell ATAC-seq data using peak counts.

**Key Features**:
- Variational autoencoder specifically designed for scATAC-seq peak data
- Learns low-dimensional representations of chromatin accessibility
- Performs batch correction across samples
- Enables differential accessibility testing
- Integrates multiple ATAC-seq datasets

**When to Use**:
- Analyzing scATAC-seq peak count matr

- 🔒 Full content on the Pro plan (€7.99/month) -

Need help with Claude Code?

Ask Dr AI - it explains things simply.

Need a tailor-made solution?

Not sure where to start with AI in your business? Get a free assessment and a tailored plan - no commitment.

Save hours every week with AI, no hassle

Doutor AI gives you 1,859 ready-to-copy AI prompts, by industry and in plain English - plus a complete technical library for those who want to go further.

See plans