identification

PyOpenMS supports peptide/protein identification through integration with search engines and provides tools for post-processing identification results including FDR control, protein inference, and annotation.

Skills
Scientific
0

What it does and how to use it

A skill that teaches Claude Code to do scientific tasks well. It is packaged knowledge the model uses whenever it is relevant.

Install the skill (command above).
In Claude Code, describe what you need - the skill turns on by itself when the context fits.
No commands to memorize: you talk in plain language and the skill does the rest.

Install (Claude Code)

mkdir -p .claude/skills/identification && curl -fsSL https://doutorai.pt/data/lib/skills__identification.md -o .claude/skills/identification/SKILL.md

Paste this command into the terminal, in your project folder, and the component installs automatically.

Content

# Peptide and Protein Identification

## Overview

PyOpenMS supports peptide/protein identification through integration with search engines and provides tools for post-processing identification results including FDR control, protein inference, and annotation.

## Supported Search Engines

PyOpenMS integrates with these search engines:

- **Comet**: Fast tandem MS search
- **Mascot**: Commercial search engine
- **MSGFPlus**: Spectral probability-based search
- **XTandem**: Open-source search tool
- **OMSSA**: NCBI search engine
- **Myrimatch**: High-throughput search
- **MSFragger**: Ultra-fast

- 🔒 Full content on the Pro plan (€7.99/month) -

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