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hmdb_data_fields

This document provides detailed information about the data fields available in HMDB metabolite entries.

  • Skills
  • Scientific
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What it does and how to use it

A skill that teaches Claude Code to do scientific tasks well. It is packaged knowledge the model uses whenever it is relevant.

  1. Install the skill (command above).
  2. In Claude Code, describe what you need - the skill turns on by itself when the context fits.
  3. No commands to memorize: you talk in plain language and the skill does the rest.

Install (Claude Code)

mkdir -p .claude/skills/hmdb-data-fields && curl -fsSL https://doutorai.pt/data/lib/skills__hmdb-data-fields.md -o .claude/skills/hmdb-data-fields/SKILL.md

Paste this command into the terminal, in your project folder, and the component installs automatically.

Content

# HMDB Data Fields Reference

This document provides detailed information about the data fields available in HMDB metabolite entries.

## Metabolite Entry Structure

Each HMDB metabolite entry contains 130+ data fields organized into several categories:

### Chemical Data Fields

**Identification:**
- `accession`: Primary HMDB ID (e.g., HMDB0000001)
- `secondary_accessions`: Previous HMDB IDs for merged entries
- `name`: Primary metabolite name
- `synonyms`: Alternative names and common names
- `chemical_formula`: Molecular formula (e.g., C6H12O6)
- `average_molecular_weight`: Average molecula

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