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graphs

PathML provides tools for constructing spatial graphs from tissue images to represent cellular and tissue-level relationships. Graph-based representations enable sophisticated spatial analysis, including neighborhood analysis, cell-cell…

  • Skills
  • Scientific
  • 1

What it does and how to use it

A skill that teaches Claude Code to do scientific tasks well. It is packaged knowledge the model uses whenever it is relevant.

  1. Install the skill (command above).
  2. In Claude Code, describe what you need - the skill turns on by itself when the context fits.
  3. No commands to memorize: you talk in plain language and the skill does the rest.

Install (Claude Code)

mkdir -p .claude/skills/graphs && curl -fsSL https://doutorai.pt/data/lib/skills__graphs.md -o .claude/skills/graphs/SKILL.md

Paste this command into the terminal, in your project folder, and the component installs automatically.

Content

# Graph Construction & Spatial Analysis

## Overview

PathML provides tools for constructing spatial graphs from tissue images to represent cellular and tissue-level relationships. Graph-based representations enable sophisticated spatial analysis, including neighborhood analysis, cell-cell interaction studies, and graph neural network applications. These graphs capture both morphological features and spatial topology for downstream computational analysis.

## Graph Types

PathML supports construction of multiple graph types:

### Cell Graphs
- Nodes represent individual cells
- Edges represent

- 🔒 Full content on the Pro plan (€7.99/month) -

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