format_adverse_events
Converts CSV or structured data into formatted AE summary tables.
- Skills
- Scientific
- 2
What it does and how to use it
A skill that teaches Claude Code to do scientific tasks well. It is packaged knowledge the model uses whenever it is relevant.
- Install the skill (command above).
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Install (Claude Code)
mkdir -p .claude/skills/format-adverse-events && curl -fsSL https://doutorai.pt/data/lib/skills__format-adverse-events.md -o .claude/skills/format-adverse-events/SKILL.mdPaste this command into the terminal, in your project folder, and the component installs automatically.
Content
#!/usr/bin/env python3
"""
Format adverse event data into tables for clinical trial reports.
Converts CSV or structured data into formatted AE summary tables.
Usage:
python format_adverse_events.py <ae_data.csv>
"""
import argparse
import csv
from collections import defaultdict
from pathlib import Path
def format_ae_summary_table(data: list) -> str:
"""Generate AE summary table in markdown format."""
# Group by treatment arm
arm_stats = defaultdict(lambda: {
'total': 0,
'any_ae': 0,
'related_ae': 0,
'sae': 0,
'deaths': 0,
'di
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