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ensembl_query

if response.status_code == 200: return response.json() elif response.status_code == 429: # Rate limited - wait and retry retry_after = int(response.headers.get('Retry-After', 1)) print(f"Rate limited. Waiting {retry_after} seconds...")…

  • Skills
  • Scientific
  • 0

What it does and how to use it

A skill that teaches Claude Code to do scientific tasks well. It is packaged knowledge the model uses whenever it is relevant.

  1. Install the skill (command above).
  2. In Claude Code, describe what you need - the skill turns on by itself when the context fits.
  3. No commands to memorize: you talk in plain language and the skill does the rest.

Install (Claude Code)

mkdir -p .claude/skills/ensembl-query && curl -fsSL https://doutorai.pt/data/lib/skills__ensembl-query.md -o .claude/skills/ensembl-query/SKILL.md

Paste this command into the terminal, in your project folder, and the component installs automatically.

Content

#!/usr/bin/env python3
"""
Ensembl REST API Query Script
Reusable functions for common Ensembl database queries with built-in rate limiting and error handling.

Usage:
    python ensembl_query.py --gene BRCA2 --species human
    python ensembl_query.py --variant rs699 --species human
    python ensembl_query.py --region "7:140424943-140624564" --species human
"""

import requests
import time
import json
import argparse
from typing import Dict, List, Optional, Any


class EnsemblAPIClient:
    """Client for querying the Ensembl REST API with rate limiting and error handling."""

    def __init_

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