download_cosmic

This script provides functions to download data from the COSMIC database (Catalogue of Somatic Mutations in Cancer).

Skills
Scientific
0

What it does and how to use it

A skill that teaches Claude Code to do scientific tasks well. It is packaged knowledge the model uses whenever it is relevant.

Install the skill (command above).
In Claude Code, describe what you need - the skill turns on by itself when the context fits.
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Install (Claude Code)

mkdir -p .claude/skills/download-cosmic && curl -fsSL https://doutorai.pt/data/lib/skills__download-cosmic.md -o .claude/skills/download-cosmic/SKILL.md

Paste this command into the terminal, in your project folder, and the component installs automatically.

Content

#!/usr/bin/env python3
"""
COSMIC Data Download Utility

This script provides functions to download data from the COSMIC database
(Catalogue of Somatic Mutations in Cancer).

Usage:
    from download_cosmic import download_cosmic_file, list_available_files

    # Download a specific file
    download_cosmic_file(
        email="user@example.com",
        password="password",
        filepath="GRCh38/cosmic/latest/CosmicMutantExport.tsv.gz",
        output_filename="mutations.tsv.gz"
    )

Requirements:
    - requests library: pip install requests
    - Valid COSMIC account credentials (regist

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