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core_api

This document covers the main functions available in the datamol namespace.

  • Skills
  • Scientific
  • 1

What it does and how to use it

A skill that teaches Claude Code to do scientific tasks well. It is packaged knowledge the model uses whenever it is relevant.

  1. Install the skill (command above).
  2. In Claude Code, describe what you need - the skill turns on by itself when the context fits.
  3. No commands to memorize: you talk in plain language and the skill does the rest.

Install (Claude Code)

mkdir -p .claude/skills/core-api && curl -fsSL https://doutorai.pt/data/lib/skills__core-api.md -o .claude/skills/core-api/SKILL.md

Paste this command into the terminal, in your project folder, and the component installs automatically.

Content

# Datamol Core API Reference

This document covers the main functions available in the datamol namespace.

## Molecule Creation and Conversion

### `to_mol(mol, ...)`
Convert SMILES string or other molecular representations to RDKit molecule objects.
- **Parameters**: Accepts SMILES strings, InChI, or other molecular formats
- **Returns**: `rdkit.Chem.Mol` object
- **Common usage**: `mol = dm.to_mol("CCO")`

### `from_inchi(inchi)`
Convert InChI string to molecule object.

### `from_smarts(smarts)`
Convert SMARTS pattern to molecule object.

### `from_selfies(selfies)`
Convert SELFIES string t

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