cellxgene-census
Query CZ CELLxGENE Census (61M+ cells). Filter by cell type/tissue/disease, retrieve expression data, integrate with scanpy/PyTorch, for population-scale single-cell analysis.
- Skills
- Scientific
- 9
What it does and how to use it
A skill that teaches Claude Code to do scientific tasks well. It is packaged knowledge the model uses whenever it is relevant.
- Install the skill (command above).
- In Claude Code, describe what you need - the skill turns on by itself when the context fits.
- No commands to memorize: you talk in plain language and the skill does the rest.
Install (Claude Code)
mkdir -p .claude/skills/cellxgene-census && curl -fsSL https://doutorai.pt/data/lib/skills__cellxgene-census.md -o .claude/skills/cellxgene-census/SKILL.mdPaste this command into the terminal, in your project folder, and the component installs automatically.
Content
---
name: cellxgene-census
description: "Query CZ CELLxGENE Census (61M+ cells). Filter by cell type/tissue/disease, retrieve expression data, integrate with scanpy/PyTorch, for population-scale single-cell analysis."
---
# CZ CELLxGENE Census
## Overview
The CZ CELLxGENE Census provides programmatic access to a comprehensive, versioned collection of standardized single-cell genomics data from CZ CELLxGENE Discover. This skill enables efficient querying and analysis of millions of cells across thousands of datasets.
The Census includes:
- **61+ million cells** from human and mouse
- **Stan
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