bioactivity_query

This script provides functions for retrieving biological activity data from PubChem for compounds and assays.

Skills
Scientific
0

What it does and how to use it

A skill that teaches Claude Code to do scientific tasks well. It is packaged knowledge the model uses whenever it is relevant.

Install the skill (command above).
In Claude Code, describe what you need - the skill turns on by itself when the context fits.
No commands to memorize: you talk in plain language and the skill does the rest.

Install (Claude Code)

mkdir -p .claude/skills/bioactivity-query && curl -fsSL https://doutorai.pt/data/lib/skills__bioactivity-query.md -o .claude/skills/bioactivity-query/SKILL.md

Paste this command into the terminal, in your project folder, and the component installs automatically.

Content

#!/usr/bin/env python3
"""
PubChem Bioactivity Data Retrieval

This script provides functions for retrieving biological activity data
from PubChem for compounds and assays.
"""

import sys
import json
import time
from typing import Dict, List, Optional

try:
    import requests
except ImportError:
    print("Error: requests is not installed. Install it with: pip install requests")
    sys.exit(1)


BASE_URL = "https://pubchem.ncbi.nlm.nih.gov/rest/pug"
PUG_VIEW_URL = "https://pubchem.ncbi.nlm.nih.gov/rest/pug_view"

# Rate limiting: 5 requests per second maximum
REQUEST_DELAY = 0.21  # seconds

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