Cookies

With your permission, we use Google Analytics cookies to measure visits and improve the site. Necessary cookies are always on. You can change your choice or withdraw consent anytime in the footer, under Cookie settings. Cookie Policy

Skip to content
PTEN
Get started

bedspace

BEDspace applies the StarSpace model to genomic data, enabling simultaneous training of numerical embeddings for both region sets and their metadata labels in a shared low-dimensional space. This allows for rich queries across regions and…

  • Skills
  • Scientific
  • 0

What it does and how to use it

A skill that teaches Claude Code to do scientific tasks well. It is packaged knowledge the model uses whenever it is relevant.

  1. Install the skill (command above).
  2. In Claude Code, describe what you need - the skill turns on by itself when the context fits.
  3. No commands to memorize: you talk in plain language and the skill does the rest.

Install (Claude Code)

mkdir -p .claude/skills/bedspace && curl -fsSL https://doutorai.pt/data/lib/skills__bedspace.md -o .claude/skills/bedspace/SKILL.md

Paste this command into the terminal, in your project folder, and the component installs automatically.

Content

# BEDspace: Joint Region and Metadata Embeddings

## Overview

BEDspace applies the StarSpace model to genomic data, enabling simultaneous training of numerical embeddings for both region sets and their metadata labels in a shared low-dimensional space. This allows for rich queries across regions and metadata.

## When to Use

Use BEDspace when working with:
- Region sets with associated metadata (cell types, tissues, conditions)
- Search tasks requiring metadata-aware similarity
- Cross-modal queries (e.g., "find regions similar to label X")
- Joint analysis of genomic content and experimenta

- 🔒 Full content on the Pro plan (€7.99/month) -

Need help with Claude Code?

Ask Dr AI - it explains things simply.

Need a tailor-made solution?

Not sure where to start with AI in your business? Get a free assessment and a tailored plan - no commitment.

Save hours every week with AI, no hassle

Doutor AI gives you 1,859 ready-to-copy AI prompts, by industry and in plain English - plus a complete technical library for those who want to go further.

See plans