batch_id_converter

This script converts multiple identifiers between biological databases using UniProt's mapping service. Supports batch processing with automatic chunking and error handling.

Skills
Scientific
0

What it does and how to use it

A skill that teaches Claude Code to do scientific tasks well. It is packaged knowledge the model uses whenever it is relevant.

Install the skill (command above).
In Claude Code, describe what you need - the skill turns on by itself when the context fits.
No commands to memorize: you talk in plain language and the skill does the rest.

Install (Claude Code)

mkdir -p .claude/skills/batch-id-converter && curl -fsSL https://doutorai.pt/data/lib/skills__batch-id-converter.md -o .claude/skills/batch-id-converter/SKILL.md

Paste this command into the terminal, in your project folder, and the component installs automatically.

Content

#!/usr/bin/env python3
"""
Batch Identifier Converter

This script converts multiple identifiers between biological databases
using UniProt's mapping service. Supports batch processing with
automatic chunking and error handling.

Usage:
    python batch_id_converter.py INPUT_FILE --from DB1 --to DB2 [options]

Examples:
    python batch_id_converter.py uniprot_ids.txt --from UniProtKB_AC-ID --to KEGG
    python batch_id_converter.py gene_ids.txt --from GeneID --to UniProtKB --output mapping.csv
    python batch_id_converter.py ids.txt --from UniProtKB_AC-ID --to Ensembl --chunk-size 50

Input 

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