batch_gene_lookup

This script efficiently processes multiple gene queries with proper rate limiting and error handling.

Skills
Scientific
0

What it does and how to use it

A skill that teaches Claude Code to do scientific tasks well. It is packaged knowledge the model uses whenever it is relevant.

Install the skill (command above).
In Claude Code, describe what you need - the skill turns on by itself when the context fits.
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Install (Claude Code)

mkdir -p .claude/skills/batch-gene-lookup && curl -fsSL https://doutorai.pt/data/lib/skills__batch-gene-lookup.md -o .claude/skills/batch-gene-lookup/SKILL.md

Paste this command into the terminal, in your project folder, and the component installs automatically.

Content

#!/usr/bin/env python3
"""
Batch gene lookup using NCBI APIs.

This script efficiently processes multiple gene queries with proper
rate limiting and error handling.
"""

import argparse
import json
import sys
import time
import urllib.parse
import urllib.request
from typing import Optional, List, Dict, Any


def read_gene_list(filepath: str) -> List[str]:
    """
    Read gene identifiers from a file (one per line).

    Args:
        filepath: Path to file containing gene symbols or IDs

    Returns:
        List of gene identifiers
    """
    try:
        with open(filepath, 'r') as f:
    

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