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AUTOMATED_CURATION

Guide to automated spike sorting curation using Bombcell, UnitRefine, and other tools.

  • Skills
  • Scientific
  • 0

What it does and how to use it

A skill that teaches Claude Code to do scientific tasks well. It is packaged knowledge the model uses whenever it is relevant.

  1. Install the skill (command above).
  2. In Claude Code, describe what you need - the skill turns on by itself when the context fits.
  3. No commands to memorize: you talk in plain language and the skill does the rest.

Install (Claude Code)

mkdir -p .claude/skills/automated-curation && curl -fsSL https://doutorai.pt/data/lib/skills__automated-curation.md -o .claude/skills/automated-curation/SKILL.md

Paste this command into the terminal, in your project folder, and the component installs automatically.

Content

# Automated Curation Reference

Guide to automated spike sorting curation using Bombcell, UnitRefine, and other tools.

## Why Automated Curation?

Manual curation is:
- **Slow**: Hours per recording session
- **Subjective**: Inter-rater variability
- **Non-reproducible**: Hard to standardize

Automated tools provide consistent, reproducible quality classification.

## Available Tools

| Tool | Classification | Language | Integration |
|------|---------------|----------|-------------|
| **Bombcell** | 4-class (single/multi/noise/non-somatic) | Python/MATLAB | SpikeInterface, Phy |
| **UnitRefi

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