arboreto
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relation
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- Scientific
- 4
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Install (Claude Code)
mkdir -p .claude/skills/arboreto && curl -fsSL https://doutorai.pt/data/lib/skills__arboreto.md -o .claude/skills/arboreto/SKILL.mdPaste this command into the terminal, in your project folder, and the component installs automatically.
Content
---
name: arboreto
description: Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed computation for large-scale datasets.
---
# Arboreto
## Overview
Arboreto is a computational library for inferring gene regulatory networks (GRNs) from gene expression data using parallelized algorithms that scale from single machines to multi-node clusters.
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