ANALYSIS

Comprehensive guide to quality metrics, visualization, and analysis of sorted Neuropixels data.

Skills
Scientific
0

What it does and how to use it

A skill that teaches Claude Code to do scientific tasks well. It is packaged knowledge the model uses whenever it is relevant.

Install the skill (command above).
In Claude Code, describe what you need - the skill turns on by itself when the context fits.
No commands to memorize: you talk in plain language and the skill does the rest.

Install (Claude Code)

mkdir -p .claude/skills/analysis && curl -fsSL https://doutorai.pt/data/lib/skills__analysis.md -o .claude/skills/analysis/SKILL.md

Paste this command into the terminal, in your project folder, and the component installs automatically.

Content

# Post-Processing & Analysis Reference

Comprehensive guide to quality metrics, visualization, and analysis of sorted Neuropixels data.

## Sorting Analyzer

The `SortingAnalyzer` is the central object for post-processing.

### Create Analyzer
```python
import spikeinterface.full as si

# Create analyzer
analyzer = si.create_sorting_analyzer(
    sorting,
    recording,
    sparse=True,                    # Use sparse representation
    format='binary_folder',         # Storage format
    folder='analyzer_output'        # Save location
)
```

### Compute Extensions
```python
# Compute all stan

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