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Pathway Deep-Dive

Deep-dive into a KEGG pathway - genes, compounds, reactions, and ASCII visualization

  • Commands
  • General
  • 0

What it does and how to use it

A /slash command, ready to use, that runs a general workflow in a single step.

  1. Install the command (command above).
  2. In Claude Code, type "/" followed by the command name.
  3. Follow the instructions the command asks for and let it run.

Install (Claude Code)

mkdir -p .claude/commands && curl -fsSL https://doutorai.pt/data/lib/commands__davepoon-subagents__commands-kegg-pathway.md -o .claude/commands/davepoon-subagents__commands-kegg-pathway.md

Paste this command into the terminal, in your project folder, and the component installs automatically.

Content

---
description: Deep-dive into a KEGG pathway - genes, compounds, reactions, and ASCII visualization
category: miscellaneous
argument-hint: <pathway_id_or_name>
---

# Pathway Deep-Dive

Provide a comprehensive overview of a KEGG pathway.

1. If `$ARGUMENTS` looks like a pathway ID (e.g., hsa00010, map00010), use it directly. Otherwise call `search_pathways` with the argument as a keyword and pick the top result.
2. Call `get_pathway_info` with full detail.
3. Call `get_pathway_genes` to list key enzymes.
4. Call `get_pathway_compounds` to list metabolites.
5. Call `render_pathway_ascii` in c

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